How AI coding agents work—and what to remember if you use them

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AI coding agents from OpenAI, Anthropic, and Google have evolved from simple code completion tools into sophisticated systems capable of working autonomously on software projects for extended periods. These agents can write complete applications, run comprehensive test suites, and debug complex issues with minimal human intervention. However, they are not magical solutions and can sometimes introduce more complexity than they resolve. Understanding their underlying mechanics helps developers make informed decisions about when and how to deploy them effectively while avoiding common pitfalls that can derail projects.

At the foundation of every AI coding agent lies a large language model, a neural network trained on vast corpora of text and code. These models function as advanced pattern-matching systems that extract statistical relationships from their training data to generate plausible continuations of given prompts. This pattern extraction enables them to interpolate across different domains and concepts, producing useful logical inferences when operating within their strengths and confabulation errors when pushed beyond their capabilities. The base models undergo further refinement through fine-tuning on curated examples and reinforcement learning from human feedback, which shapes them to follow instructions, utilize tools appropriately, and generate more useful outputs for software development tasks.

The architecture of modern coding agents represents a significant evolution from standalone language models. Each agent functions as a sophisticated program wrapper that orchestrates multiple LLMs working in concert. A supervising LLM interprets tasks from human users and decomposes them into manageable subtasks, which are then assigned to parallel LLM instances equipped with software tools for execution. This hierarchical structure allows the supervising agent to monitor progress, interrupt suboptimal approaches, and evaluate results across different aspects of a project. Anthropic’s engineering documentation describes this pattern as “gather context, take action, verify work, repeat,” encapsulating the iterative nature of autonomous software development.

When running locally through command-line interfaces, these agents receive conditional permissions to perform potentially dangerous operations. They can write files to local storage, execute exploratory commands like directory listings, fetch web resources, download software packages, and upload files to remote servers. This power necessitates careful usage and robust security measures. Web-based agents operate differently, provisioning sandboxed cloud containers preloaded with user code repositories. These isolated environments allow agents to read, edit, and execute code safely, with operating system-level boundaries preventing unauthorized access to the host system or network.

The context limitation represents one of the most significant constraints facing AI coding agents. Every language model possesses a finite context window that determines how much information it can process before losing track of earlier parts of the conversation. Each interaction appends to a growing prompt that includes the entire conversation history, generated code, and simulated reasoning tokens. This process becomes computationally expensive as prompt size increases quadratically, with every token evaluated against every other token. Researchers have identified “context rot,” where model accuracy degrades as context windows fill, depleting what Anthropic terms an “attention budget.” This limitation naturally restricts the size of codebases that agents can process simultaneously, and feeding large code files repeatedly quickly exhausts token limits.

To circumvent these constraints, developers have engineered several clever techniques. AI models are fine-tuned to outsource activities to specialized software tools rather than processing everything through the language model itself. For instance, agents might write Python scripts to extract data from large files instead of feeding entire files into the LLM, preserving tokens and improving accuracy. Command-line utilities like head and tail analyze large data volumes without loading complete objects into context. This approach extends a concept first seen in early 2023, where AI systems began using external software tools autonomously. These agents essentially function as guided, semi-autonomous tool-using programs that leverage traditional software capabilities alongside language understanding.

Dynamic context management marks another major breakthrough in agent design. When approaching context limits, agents compress conversation history by summarizing it, sacrificing detail to preserve key information. This compaction process distills context while maintaining high-fidelity representations of architectural decisions, unresolved bugs, and critical implementation details. Consequently, agents periodically “forget” large portions of their work but retain enough structural knowledge to reorient themselves by reading existing code, documentation, and change logs. External note-taking systems like CLAUDE.md and AGENTS.md files help agents track progress across complex tasks, storing essential context that would otherwise be lost during compression cycles.

For extended projects requiring prolonged work, companies employ multi-agent architectures that distribute cognitive load across specialized components. Anthropic’s research documentation describes an orchestrator-worker pattern where a lead agent coordinates overall strategy while delegating to specialized subagents operating in parallel. When users submit queries, the lead agent analyzes requirements, develops comprehensive plans, and spawns subagents to explore different solution aspects simultaneously. These subagents act as intelligent filters, returning only relevant information rather than their full context to the orchestrator. This approach consumes tokens rapidly, with agents using approximately four times more tokens than standard chatbot interactions and multi-agent systems consuming about fifteen times more. Economic viability demands high-value tasks that justify these increased computational costs.

Human expertise remains crucial when working with AI coding agents. Developers should understand fundamental software development practices including version control, incremental backups, feature-by-feature implementation, and comprehensive testing. The phenomenon of “vibe coding”—generating AI code without comprehension—poses significant risks for production environments. Code that developers don’t fully understand can introduce security vulnerabilities, subtle bugs, and accumulating technical debt that compounds over time. Independent AI researcher Simon Willison argues that developers must prove their code works, emphasizing that generating large patches through prompting has become trivial, but contributing proven, functional code remains valuable.

Effective human-AI collaboration requires deliberate workflow design. Claude Code’s best practices documentation recommends specific research and planning steps before any code generation. Developers should first instruct agents to read relevant files and explicitly prohibit coding until a plan is established. Without these preliminary steps, language models tend to jump immediately to implementation, potentially reaching for quick solutions that satisfy immediate objectives but break under future expansion. Understanding good software architecture helps guide agents toward building modular, extensible programs rather than brittle, single-purpose solutions.

The effectiveness of AI coding tools varies significantly based on developer experience and project context. A randomized controlled trial published by the nonprofit research organization METR in July 2025 found that experienced open-source developers actually required 19 percent more time to complete tasks when using AI tools, despite perceiving themselves as working faster. The study participants averaged five years and 1,500 commits on their codebases, working with large, mature repositories. The models used, primarily Claude 3.5 and 3.7 Sonnet via Cursor, have since been superseded by more capable versions, leaving open the question of whether newer models would produce different results. This suggests that AI coding tools may not provide universal speed improvements, particularly for developers with deep familiarity with their codebases.

Given these complexities and potential hazards, AI coding agents currently excel most in specific scenarios. Proof-of-concept demonstrations, internal tools, and experimental projects represent ideal use cases where the stakes are lower and the exploration value is higher. Since AI models lack genuine agency and cannot be held accountable for mistakes, human oversight remains the critical safeguard. The technology continues evolving rapidly, with each generation addressing previous limitations, but the fundamental principle persists: these tools augment human capability rather than replace human judgment. Understanding their inner workings enables developers to harness their strengths while mitigating their weaknesses, leading to more productive and reliable software development outcomes.

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